Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs35244862 chr7:66312374 C/T 0.000223 177 24.85 29.57 33.17 KM Plot
PCPG rs35249621 chr2:242528430 C/A 4.87E-11 177 25.87 24.7 10.3 KM Plot
PCPG rs35255694 chr15:30956187 C/CT 0 173 27.2 23.43 3.17 KM Plot
PCPG rs35256197 chr2:24295030 A/AT 0.00011 178 25.4 26.57 17.43 KM Plot
PCPG rs35271029 chr8:74303163 G/A 0.00018 173 25.17 25.78 43.47 KM Plot
PCPG rs35285305 chr16:89949205 G/A 4.7E-5 173 25.87 21.5 36.37 KM Plot
PCPG rs35298309 chr15:43077001 T/C 1.9E-13 176 25.7 24.7 25.17 KM Plot
PCPG rs35301488 chr2:242557179 A/C 4.04E-5 178 25.87 26.47 20.2 KM Plot
PCPG rs35301668 chr2:209978567 AT/A 5.41E-8 176 20.03 23.53 27.27 KM Plot
PCPG rs35303380 chr3:150863963 G/C 5.18E-11 172 25 33.13 10.3 KM Plot
PCPG rs35305419 chr2:24280251 T/G 0.000122 176 25.28 27.52 17.43 KM Plot
PCPG rs35310651 chr17:50334040 C/A 0.00028 170 26.12 28.38 16.33 KM Plot
PCPG rs35311452 chr17:50295022 G/A 3.25E-5 178 25.53 27.95 14.43 KM Plot
PCPG rs35317012 chr22:31647783 G/GCT 1.11E-5 176 25.87 13.52 1.3 KM Plot
PCPG rs35336033 chr3:136656794 AG/A 0.000323 175 20.2 27.75 23.03 KM Plot